STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1249PFAM: dihydroneopterin aldolase; KEGG: ajs:Ajs_0495 dihydroneopterin aldolase. (123 aa)    
Predicted Functional Partners:
Daci_2189
KEGG: aav:Aave_1974 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK.
  
 
 0.993
Daci_4924
Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.
  
 
 0.993
Daci_5449
PFAM: GTP cyclohydrolase I; KEGG: ajs:Ajs_0879 GTP cyclohydrolase I.
 
  
 0.942
Daci_2357
KEGG: pau:PA14_13330 putative phosphatase or phosphodiesterase.
     
 0.910
Daci_4037
KEGG: ajs:Ajs_3582 alkaline phosphatase.
     
 0.910
Daci_5032
KEGG: ajs:Ajs_1157 alkaline phosphatase.
     
 0.910
Daci_5567
PFAM: Alkaline phosphatase; KEGG: rso:RSc0098 putative alkaline phosphatase signal peptide protein; Belongs to the alkaline phosphatase family.
     
  0.900
Daci_5568
PFAM: Alkaline phosphatase; KEGG: rso:RSc0097 putative alkaline phosphatase lipoprotein transmembrane; Belongs to the alkaline phosphatase family.
     
  0.900
Daci_1250
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_0496 short-chain dehydrogenase/reductase SDR.
     
 0.717
ttcA
PP-loop domain protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.
  
    0.685
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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