STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1250PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_0496 short-chain dehydrogenase/reductase SDR. (261 aa)    
Predicted Functional Partners:
Daci_1249
PFAM: dihydroneopterin aldolase; KEGG: ajs:Ajs_0495 dihydroneopterin aldolase.
     
 0.717
Daci_2285
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0336 3-ketoacyl-(acyl-carrier-protein) reductase.
  
     0.669
Daci_5646
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ppf:Pput_1844 short-chain dehydrogenase/reductase SDR.
  
     0.634
Daci_1251
PFAM: protein of unknown function DUF185; KEGG: ajs:Ajs_0497 protein of unknown function DUF185.
       0.624
Daci_5270
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.620
Daci_6048
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_4129 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
 0.586
Daci_4255
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reh:H16_A0033 short chain dehydrogenase.
  
     0.585
Daci_1790
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: reh:H16_A3487 putative short chain dehydrogenase.
  
     0.584
Daci_3602
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aav:Aave_2479 acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.583
Daci_4929
KEGG: ajs:Ajs_2388 hypothetical protein.
  
     0.570
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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