Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1264PFAM: beta-lactamase domain protein; KEGG: aav:Aave_4202 beta-lactamase domain protein. (319 aa)    
Predicted Functional Partners:
Daci_1266
KEGG: ajs:Ajs_0517 PGAP1 family protein.
 
   
 0.747
Daci_0371
TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pna:Pnap_1243 hemerythrin-like metal-binding protein.
  
     0.630
Daci_0829
PFAM: branched-chain amino acid transport; KEGG: ajs:Ajs_4055 branched-chain amino acid transport.
  
     0.622
Daci_0621
KEGG: ajs:Ajs_3809 flagellar protein FliT.
  
     0.617
Daci_1265
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase.
       0.550
Daci_6032
KEGG: ajs:Ajs_4108 hypothetical protein.
  
     0.536
Daci_0881
PFAM: Sporulation domain protein; KEGG: aav:Aave_4630 sporulation domain protein.
  
     0.534
Daci_5328
KEGG: ajs:Ajs_3321 hypothetical protein.
  
     0.496
Daci_3007
KEGG: ajs:Ajs_2549 hypothetical protein.
  
     0.487
Daci_1270
PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_0522 GCN5-related N-acetyltransferase.
 
     0.476
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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