Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1266KEGG: ajs:Ajs_0517 PGAP1 family protein. (332 aa)    
Predicted Functional Partners:
Daci_1264
PFAM: beta-lactamase domain protein; KEGG: aav:Aave_4202 beta-lactamase domain protein.
 
   
 0.747
Daci_0881
PFAM: Sporulation domain protein; KEGG: aav:Aave_4630 sporulation domain protein.
  
     0.729
Daci_3007
KEGG: ajs:Ajs_2549 hypothetical protein.
  
     0.586
Daci_0904
PFAM: porin Gram-negative type; KEGG: pol:Bpro_4315 putative transmembrane outer membrane porin signal peptide protein.
  
    0.578
Daci_2544
PFAM: porin Gram-negative type; KEGG: vei:Veis_0301 porin, gram-negative type.
  
    0.572
Daci_2904
KEGG: aav:Aave_1802 hypothetical protein.
  
     0.566
Daci_0539
PFAM: YiaAB two helix domain protein; KEGG: aav:Aave_4490 YiaAB two helix domain protein.
 
     0.556
Daci_1265
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase.
     
 0.526
Daci_4929
KEGG: ajs:Ajs_2388 hypothetical protein.
  
     0.512
Daci_0526
KEGG: ajs:Ajs_3888 hypothetical protein.
  
     0.500
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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