STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1267KEGG: aav:Aave_4193 phenylalanine-4-hydroxylase; TIGRFAM: phenylalanine-4-hydroxylase; PFAM: aromatic amino acid hydroxylase. (296 aa)    
Predicted Functional Partners:
Daci_5338
PFAM: transcriptional coactivator/pterin dehydratase; KEGG: ajs:Ajs_3348 transcriptional coactivator/pterin dehydratase.
 
 0.995
Daci_2171
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: mpt:Mpe_A3682 aspartate transaminase.
  
 
 0.946
Daci_4002
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_2151 aspartate transaminase.
  
 
 0.946
Daci_4721
TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: ajs:Ajs_2466 chorismate mutase.
    
 0.939
Daci_5769
PFAM: aminotransferase class I and II; KEGG: pst:PSPTO_2925 aspartate aminotransferase.
   
 
 0.911
Daci_4795
KEGG: reu:Reut_B4501 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.907
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: Orn/Lys/Arg decarboxylase major region; aminotransferase class I and II; KEGG: gox:GOX1171 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.906
Daci_2805
PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_3179 aminotransferase, class I and II.
     
 0.906
hisC-2
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: aav:Aave_1031 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.906
Daci_4971
Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
     
 0.903
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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