STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1287TIGRFAM: DNA binding domain protein, excisionase family; KEGG: tfu:Tfu_2818 hypothetical protein. (371 aa)    
Predicted Functional Partners:
Daci_1286
KEGG: aba:Acid345_4150 hypothetical protein.
 
  
 0.946
Daci_4787
PFAM: protein of unknown function DUF350; KEGG: ajs:Ajs_4097 protein of unknown function DUF350.
 
     0.518
speE-2
Spermine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
     0.501
Daci_0424
PFAM: protein of unknown function DUF477; KEGG: ajs:Ajs_0315 protein of unknown function DUF477.
  
  
 0.498
Daci_4784
KEGG: ajs:Ajs_4093 twin-arginine translocation pathway signal.
 
     0.426
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.