Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1305KEGG: vei:Veis_0682 general secretory pathway protein K. (262 aa)    
Predicted Functional Partners:
Daci_1304
KEGG: aav:Aave_4155 general secretion pathway protein J.
 
   
 0.950
Daci_1302
TIGRFAM: general secretion pathway protein H; KEGG: vei:Veis_0685 general secretion pathway protein H.
 
     0.949
Daci_1306
PFAM: Fimbrial assembly family protein; KEGG: aav:Aave_4153 fimbrial assembly family protein.
 
  
 0.910
Daci_5693
PFAM: General secretion pathway protein K; KEGG: ajs:Ajs_0671 general secretion pathway protein K.
     
  0.900
Daci_5692
KEGG: vei:Veis_3524 hypothetical protein.
  
 
 0.895
Daci_1303
KEGG: vei:Veis_0684 general secretion pathway protein I.
  
 
 0.877
Daci_1309
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: aav:Aave_4150 general secretion pathway protein D.
 
   
 0.874
Daci_5691
PFAM: type II secretion system protein I/J; KEGG: vei:Veis_3523 general secretion pathway protein I.
  
 
 0.871
Daci_1301
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: aav:Aave_4158 general secretion pathway protein G.
 
 
 0.822
Daci_1311
KEGG: aav:Aave_4148 hypothetical protein.
 
     0.761
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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