STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1307KEGG: aav:Aave_4152 general secretion pathway protein M. (191 aa)    
Predicted Functional Partners:
Daci_5695
KEGG: ajs:Ajs_0669 hypothetical protein.
     
 0.900
Daci_1308
KEGG: aav:Aave_4151 hypothetical protein.
     
 0.839
Daci_1306
PFAM: Fimbrial assembly family protein; KEGG: aav:Aave_4153 fimbrial assembly family protein.
     
 0.803
Daci_1309
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: aav:Aave_4150 general secretion pathway protein D.
     
 0.769
Daci_1310
KEGG: vei:Veis_0677 hypothetical protein.
       0.631
Daci_1305
KEGG: vei:Veis_0682 general secretory pathway protein K.
     
 0.626
Daci_1303
KEGG: vei:Veis_0684 general secretion pathway protein I.
     
 0.579
Daci_1302
TIGRFAM: general secretion pathway protein H; KEGG: vei:Veis_0685 general secretion pathway protein H.
       0.565
Daci_1304
KEGG: aav:Aave_4155 general secretion pathway protein J.
       0.525
Daci_1301
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: aav:Aave_4158 general secretion pathway protein G.
     
 0.415
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.