Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1309TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: aav:Aave_4150 general secretion pathway protein D. (819 aa)    
Predicted Functional Partners:
Daci_1306
PFAM: Fimbrial assembly family protein; KEGG: aav:Aave_4153 fimbrial assembly family protein.
 
  
 0.939
Daci_5697
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: aav:Aave_0917 general secretion pathway protein D.
  
  
 
0.923
Daci_1302
TIGRFAM: general secretion pathway protein H; KEGG: vei:Veis_0685 general secretion pathway protein H.
 
   
 0.893
Daci_1301
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: aav:Aave_4158 general secretion pathway protein G.
 
  
 0.887
Daci_1305
KEGG: vei:Veis_0682 general secretory pathway protein K.
 
   
 0.874
Daci_1300
PFAM: type II secretion system protein; KEGG: aav:Aave_4159 type II secretion system protein.
 
  
 0.845
Daci_1304
KEGG: aav:Aave_4155 general secretion pathway protein J.
 
     0.840
Daci_5688
KEGG: aav:Aave_0926 hypothetical protein.
  
 
 0.814
Daci_1299
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.789
Daci_1307
KEGG: aav:Aave_4152 general secretion pathway protein M.
     
 0.780
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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