STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1316PFAM: Methyltransferase type 12; KEGG: aav:Aave_4143 methyltransferase type 12. (293 aa)    
Predicted Functional Partners:
Daci_1313
PFAM: ABC-2 type transporter; KEGG: aav:Aave_4146 ABC-2 type transporter.
     
 0.736
Daci_1314
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_4145 ABC transporter-related protein.
     
 0.736
Daci_1315
KEGG: aav:Aave_4144 hypothetical protein.
       0.713
Daci_1312
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: aav:Aave_4147 PpiC-type peptidyl-prolyl cis-trans isomerase.
  
   0.501
Daci_4558
KEGG: bur:Bcep18194_A4864 metal-dependent phosphohydrolase.
   
   0.485
Daci_4972
PFAM: metallophosphoesterase; KEGG: sma:SAV2323 putative serine/threonine protein phosphatase.
   
   0.485
Daci_4753
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_6813 arthrofactin synthetase/syringopeptin synthetase C-related non-ribosomal peptide synthetase.
   
 
 0.482
queF
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
    
 
 0.444
Daci_1311
KEGG: aav:Aave_4148 hypothetical protein.
 
     0.418
Daci_4310
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
  
  
 0.402
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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