STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1332Hypothetical protein; KEGG: aav:Aave_1629 carbohydrate-binding family V/XII. (311 aa)    
Predicted Functional Partners:
Daci_1331
Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.
 
  
 0.873
Daci_1333
KEGG: sit:TM1040_1609 hypothetical protein.
       0.783
Daci_1334
Hypothetical protein.
       0.773
Daci_1335
Hypothetical protein.
       0.773
Daci_1330
PFAM: Protein of unknown function DUF1799 phage-related; KEGG: pap:PSPA7_2416 phage protein.
       0.583
Daci_3255
PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1782 prophage tail length tape measure.
 
    0.576
Daci_1637
TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: sit:TM1040_1063 hypothetical protein.
  
 
 0.534
Daci_4676
Hypothetical protein; KEGG: aav:Aave_1782 prophage tail length tape measure.
 
  
 0.527
Daci_1329
Hypothetical protein.
       0.516
Daci_1632
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bbr:BB1693 portal protein.
 
   0.514
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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