Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1341KEGG: ajs:Ajs_0596 putative hydrolase. (300 aa)    
Predicted Functional Partners:
Daci_1343
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_0598 enoyl-CoA hydratase/isomerase.
       0.746
Daci_1342
KEGG: vei:Veis_1900 hypothetical protein.
       0.657
Daci_1344
PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0599 uncharacterized domain 1.
       0.627
Daci_1339
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_0594 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
       0.570
Daci_1340
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ajs:Ajs_0595 acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.
       0.540
Daci_1338
KEGG: ajs:Ajs_0593 hypothetical protein.
 
     0.523
Daci_1331
Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.
 
     0.427
Daci_4880
PFAM: protein of unknown function DUF962; KEGG: aav:Aave_2666 protein of unknown function DUF962.
  
     0.410
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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