Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1344PFAM: thioesterase superfamily protein; KEGG: ajs:Ajs_0599 uncharacterized domain 1. (166 aa)    
Predicted Functional Partners:
Daci_1343
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_0598 enoyl-CoA hydratase/isomerase.
  
 
 0.827
Daci_1342
KEGG: vei:Veis_1900 hypothetical protein.
     
 0.748
Daci_1341
KEGG: ajs:Ajs_0596 putative hydrolase.
       0.627
Daci_4952
KEGG: aav:Aave_2989 hypothetical protein.
 
     0.515
Daci_1339
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ajs:Ajs_0594 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
 
 0.492
Daci_0875
PFAM: regulatory protein MarR; KEGG: ajs:Ajs_4000 transcriptional regulator, MarR family.
  
     0.484
Daci_5431
PFAM: outer membrane lipoprotein LolB; KEGG: aav:Aave_3608 putative lipoprotein.
  
     0.459
Daci_1340
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ajs:Ajs_0595 acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.453
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.448
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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