Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1365TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0610 polar amino acid ABC transporter, inner membrane subunit. (250 aa)    
Predicted Functional Partners:
Daci_1367
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0612 ABC transporter related.
 
 0.994
Daci_1366
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0611 polar amino acid ABC transporter, inner membrane subunit.
 
 
 
0.986
Daci_1364
PFAM: extracellular solute-binding protein family 3; KEGG: ajs:Ajs_0609 extracellular solute-binding protein, family 3.
 
 0.982
Daci_0070
PFAM: extracellular solute-binding protein family 3; KEGG: vei:Veis_4737 extracellular solute-binding protein, family 3.
 
 0.964
Daci_0358
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0244 ABC transporter related.
 
 
 0.894
Daci_5537
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_1012 ABC transporter-related protein.
 
 
 0.890
Daci_5772
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pst:PSPTO_2630 amino acid ABC transporter, ATP-binding protein.
 
 
 0.889
Daci_0227
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2106 probable amino-acid ATP-binding ABC transporter protein.
 
 
 0.884
Daci_5673
PFAM: extracellular solute-binding protein family 3; KEGG: vei:Veis_0788 extracellular solute-binding protein, family 3.
 
 
 0.836
Daci_0360
PFAM: extracellular solute-binding protein family 3; KEGG: aav:Aave_0301 extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.834
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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