STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1370PFAM: conserved hypothetical protein; KEGG: aav:Aave_1913 uncharacterized protein UPF0065. (338 aa)    
Predicted Functional Partners:
Daci_5393
PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_1070 protein of unknown function DUF112, transmembrane.
    0.813
Daci_3049
PFAM: protein of unknown function DUF112 transmembrane; KEGG: rme:Rmet_5627 protein of unknown function DUF112, transmembrane.
    0.789
Daci_2520
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_1644 protein of unknown function DUF112, transmembrane.
    0.768
Daci_1369
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aav:Aave_1914 peptidase M20.
       0.737
Daci_3804
PFAM: conserved hypothetical protein; KEGG: bbr:BB5009 putative tricarboxylic transport membrane protein.
  
     0.572
Daci_1371
PFAM: conserved hypothetical protein; KEGG: aav:Aave_1913 uncharacterized protein UPF0065.
 
    
0.566
Daci_1368
PFAM: sugar isomerase (SIS); KEGG: aav:Aave_1915 transcriptional regulator, RpiR family.
       0.528
Daci_5058
PFAM: conserved hypothetical protein; KEGG: pna:Pnap_1237 uncharacterized protein UPF0065.
  
     0.472
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.