Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1376PFAM: conserved hypothetical protein; KEGG: rme:Rmet_3913 uncharacterized protein UPF0065. (340 aa)    
Predicted Functional Partners:
Daci_1378
PFAM: porin Gram-negative type; KEGG: reu:Reut_B3712 porin, gram-negative type.
 
     0.826
Daci_1373
PFAM: beta-lactamase domain protein; KEGG: reu:Reut_B3706 beta-lactamase-like.
 
     0.778
Daci_1377
PFAM: CoA-binding domain protein; KEGG: rme:Rmet_3916 CoA-binding.
       0.773
Daci_1375
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: reu:Reut_B3704 protein of unknown function DUF1214:protein of unknown function DUF1254.
 
     0.766
Daci_5393
PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_1070 protein of unknown function DUF112, transmembrane.
 
    0.740
Daci_1374
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: reu:Reut_B3898 protein of unknown function DUF1214:protein of unknown function DUF1254.
       0.709
Daci_1372
PFAM: conserved hypothetical protein; KEGG: rme:Rmet_5161 uncharacterized protein UPF0065.
 
    
0.625
Daci_3049
PFAM: protein of unknown function DUF112 transmembrane; KEGG: rme:Rmet_5627 protein of unknown function DUF112, transmembrane.
 
    0.603
Daci_2520
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_1644 protein of unknown function DUF112, transmembrane.
 
    0.565
Daci_1379
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: abo:ABO_1600 transcriptional regulator Anr.
       0.534
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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