STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1378PFAM: porin Gram-negative type; KEGG: reu:Reut_B3712 porin, gram-negative type. (354 aa)    
Predicted Functional Partners:
Daci_1373
PFAM: beta-lactamase domain protein; KEGG: reu:Reut_B3706 beta-lactamase-like.
 
     0.849
Daci_1376
PFAM: conserved hypothetical protein; KEGG: rme:Rmet_3913 uncharacterized protein UPF0065.
 
     0.840
Daci_1375
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: reu:Reut_B3704 protein of unknown function DUF1214:protein of unknown function DUF1254.
 
     0.820
Daci_1377
PFAM: CoA-binding domain protein; KEGG: rme:Rmet_3916 CoA-binding.
       0.773
Daci_1374
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: reu:Reut_B3898 protein of unknown function DUF1214:protein of unknown function DUF1254.
 
     0.762
Daci_2014
KEGG: vei:Veis_4644 porin, gram-negative type.
  
  
 
0.672
Daci_5627
KEGG: vei:Veis_4644 porin, gram-negative type.
  
  
 
0.670
Daci_1725
KEGG: vei:Veis_4644 porin, gram-negative type.
  
  
 
0.668
Daci_5682
KEGG: ajs:Ajs_0682 porin, gram-negative type.
  
  
 
0.663
Daci_0724
KEGG: vei:Veis_4644 porin, gram-negative type.
  
  
 
0.661
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.