STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1386PFAM: protein of unknown function DUF88; KEGG: aav:Aave_4318 protein of unknown function DUF88. (303 aa)    
Predicted Functional Partners:
Daci_1387
KEGG: aav:Aave_4317 putative transmembrane protein.
       0.853
htpX
PFAM: peptidase M48 Ste24p; HtpX domain protein; KEGG: aav:Aave_4316 peptidase M48, Ste24p; Belongs to the peptidase M48B family.
       0.815
pyrC
Dihydroorotase, homodimeric type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
 
     0.763
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.582
Daci_1389
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
     
 0.494
Daci_1383
PFAM: conserved hypothetical protein; KEGG: vei:Veis_2904 uncharacterized protein UPF0065.
       0.490
Daci_1384
L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: bte:BTH_II0813 dehydrogenase, FMN-dependent family.
       0.490
vapC
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
     
 0.489
pheT
KEGG: ajs:Ajs_2395 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.428
Daci_4346
KEGG: nar:Saro_3185 transglycosylase-associated protein.
  
     0.408
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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