STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1391KEGG: ajs:Ajs_3741 hypothetical protein. (119 aa)    
Predicted Functional Partners:
Daci_0534
KEGG: ajs:Ajs_3882 hypothetical protein.
  
     0.536
Daci_3778
KEGG: aav:Aave_0646 UvrD/REP helicase.
 
     0.533
Daci_4373
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RSc0595 putative outer membrane receptor signal peptide protein.
  
 
 
 0.508
Daci_1389
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.494
vapC
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.494
Daci_4369
PFAM: Forkhead-associated protein; KEGG: aav:Aave_3060 FHA domain containing protein.
 
  
 0.484
Daci_3687
PFAM: Propeptide PepSY amd peptidase M4; KEGG: prw:PsycPRwf_1922 propeptide, PepSY amd peptidase M4.
 
   
 0.451
Daci_0684
KEGG: aav:Aave_0423 PilT protein domain protein.
  
     0.437
Daci_0646
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: aav:Aave_4387 flagellar motor switch protein FliN.
   
 
 0.407
Daci_3371
PFAM: protein of unknown function DUF72; KEGG: aav:Aave_1869 protein of unknown function DUF72.
  
     0.406
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.