STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1398PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_3734 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (418 aa)    
Predicted Functional Partners:
Daci_1397
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ajs:Ajs_3735 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
    
  0.639
Daci_1396
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_3736 acyl-CoA dehydrogenase domain protein.
  
 
  0.631
Daci_1395
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: aav:Aave_4313 acyl-CoA dehydrogenase domain protein.
  
 
  0.589
Daci_1399
PFAM: conserved hypothetical protein; KEGG: aav:Aave_4309 uncharacterized protein UPF0065.
  
    0.507
Daci_1401
PFAM: 2-nitropropane dioxygenase NPD; KEGG: ajs:Ajs_3732 2-nitropropane dioxygenase, NPD.
  
    0.440
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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