STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1404PFAM: conserved hypothetical protein; KEGG: reh:H16_A1555 probable extra-cytoplasmic solute receptor. (328 aa)    
Predicted Functional Partners:
Daci_5393
PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_1070 protein of unknown function DUF112, transmembrane.
 
    0.809
Daci_3049
PFAM: protein of unknown function DUF112 transmembrane; KEGG: rme:Rmet_5627 protein of unknown function DUF112, transmembrane.
 
    0.801
Daci_2520
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_1644 protein of unknown function DUF112, transmembrane.
 
    0.782
Daci_1405
PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A2076 long-chain-fatty-acid--CoA ligase.
       0.543
Daci_1403
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: ajs:Ajs_2809 electron transfer flavoprotein, alpha subunit.
       0.497
Daci_1400
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3733 uncharacterized protein UPF0065.
 
    
0.494
Daci_1402
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ajs:Ajs_3731 electron transfer flavoprotein beta-subunit.
       0.478
Daci_1408
PFAM: conserved hypothetical protein; KEGG: aav:Aave_4304 uncharacterized protein UPF0065.
 
    
0.462
Daci_1399
PFAM: conserved hypothetical protein; KEGG: aav:Aave_4309 uncharacterized protein UPF0065.
 
    
0.445
Daci_1406
PFAM: class II aldolase/adducin family protein; KEGG: aav:Aave_4305 class II aldolase/adducin family protein.
       0.445
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.