Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1409KEGG: ppf:Pput_3520 integrase, catalytic region. (209 aa)    
Predicted Functional Partners:
Daci_1414
Transposase; KEGG: pen:PSEEN4950 transposase.
   
 0.823
Daci_1411
PFAM: IS66 Orf2 family protein; KEGG: reu:Reut_C6378 IS66 Orf2 like.
 
     0.703
Daci_1410
PFAM: transposase IS3/IS911 family protein; KEGG: pna:Pnap_4532 transposase IS3/IS911 family protein.
  
  
 0.679
Daci_1412
PFAM: transposase IS66; KEGG: pna:Pnap_2521 transposase IS66.
 
     0.528
Daci_1408
PFAM: conserved hypothetical protein; KEGG: aav:Aave_4304 uncharacterized protein UPF0065.
       0.422
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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