Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1424TIGRFAM: adhesin HecA family; PFAM: Haemagluttinin repeat-containing protein; KEGG: bpl:BURPS1106A_1129 cell surface protein. (2061 aa)    
Predicted Functional Partners:
Daci_1421
PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: reu:Reut_A2932 hemolysin activator HlyB.
 
 
 0.880
Daci_1420
TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: filamentous haemagglutinin domain protein; KEGG: bam:Bamb_5443 filamentous haemagglutinin family outer membrane protein.
 
   
 0.763
Daci_1423
KEGG: rci:RRC32 hypothetical protein.
       0.565
Daci_5417
PFAM: Peptidoglycan-binding LysM; KEGG: mfa:Mfla_0431 peptidoglycan-binding LysM.
 
     0.494
Daci_5763
PFAM: Fimbrial protein; KEGG: rme:Rmet_2545 fimbrial protein.
  
  
 0.475
Daci_0124
PFAM: Fimbrial protein; KEGG: kpn:KPN_03276 putative fimbrial-like protein.
  
  
 0.438
Daci_5937
PFAM: pili assembly chaperone; KEGG: bam:Bamb_4023 pili assembly chaperone.
  
  
 0.430
Daci_5934
PFAM: pili assembly chaperone; KEGG: bam:Bamb_4023 pili assembly chaperone.
  
  
 0.419
Daci_2528
PFAM: lipolytic protein G-D-S-L family; KEGG: pau:PA14_23690 putative secreted protein.
  
 
 0.402
Daci_4035
Arylesterase; PFAM: lipolytic protein G-D-S-L family; KEGG: ajs:Ajs_2271 lipolytic enzyme, G-D-S-L family.
  
 
 0.402
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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