Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1452PFAM: NUDIX hydrolase; beta-lactamase domain protein; KEGG: aav:Aave_0793 beta-lactamase domain protein. (556 aa)    
Predicted Functional Partners:
Daci_1451
PFAM: RNA-binding S4 domain protein; KEGG: aav:Aave_0792 RNA-binding S4 domain protein.
       0.748
Daci_4952
KEGG: aav:Aave_2989 hypothetical protein.
 
     0.740
Daci_0875
PFAM: regulatory protein MarR; KEGG: ajs:Ajs_4000 transcriptional regulator, MarR family.
  
    0.724
Daci_0836
KEGG: ajs:Ajs_4003 hypothetical protein.
 
     0.619
Daci_4929
KEGG: ajs:Ajs_2388 hypothetical protein.
  
     0.611
Daci_2904
KEGG: aav:Aave_1802 hypothetical protein.
 
     0.609
Daci_5447
KEGG: rfr:Rfer_1303 hypothetical protein.
  
     0.607
Daci_1123
KEGG: vei:Veis_0989 hypothetical protein.
  
     0.555
Daci_5531
KEGG: vei:Veis_2402 sulfate transporter/antisigma-factor antagonist STAS.
  
     0.555
Daci_1454
PFAM: protein of unknown function DUF484; KEGG: ajs:Ajs_3687 protein of unknown function DUF484.
       0.554
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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