STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1484PFAM: ribonuclease II; KEGG: aav:Aave_0843 ribonuclease II. (692 aa)    
Predicted Functional Partners:
Daci_4830
PFAM: 3'-5' exonuclease; KEGG: rfr:Rfer_2827 3'-5' exonuclease.
  
 
 0.864
Daci_1483
TIGRFAM: TonB family protein; KEGG: ajs:Ajs_3655 TonB family protein.
  
    0.779
Daci_2229
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain protein.
  
    0.760
Daci_2230
PFAM: protein of unknown function DUF513 hemX; KEGG: vei:Veis_1038 protein of unknown function DUF513, HemX.
  
     0.760
Daci_0514
KEGG: aav:Aave_4527 putative proline rich signal peptide protein.
  
     0.748
lptA
Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
     0.741
priB
Putative primosomal replication protein; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
 
     0.732
Daci_1485
PFAM: protein of unknown function UPF0227; KEGG: ajs:Ajs_3649 protein of unknown function UPF0227.
 
     0.729
Daci_4933
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: aav:Aave_1838 tRNA/rRNA methyltransferase (SpoU).
 
 
 0.728
Daci_4910
KEGG: aav:Aave_2634 putative inner membrane transmembrane protein.
  
     0.716
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.