STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1489PFAM: protein of unknown function DUF446; KEGG: shm:Shewmr7_2718 protein of unknown function DUF446. (132 aa)    
Predicted Functional Partners:
Daci_4607
PFAM: FAD linked oxidase domain protein; KEGG: bam:Bamb_6039 FAD linked oxidase domain protein.
  
     0.654
Daci_0900
PFAM: DTW domain containing protein; KEGG: pol:Bpro_4750 hypothetical protein.
  
     0.587
Daci_1324
PFAM: regulatory protein TetR; KEGG: aav:Aave_4136 transcriptional regulator, TetR family.
  
     0.576
Daci_1490
KEGG: aav:Aave_0853 hypothetical protein.
       0.471
Daci_2478
PFAM: pseudouridine synthase; KEGG: aav:Aave_2278 pseudouridine synthase.
 
  
 0.404
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.