Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Daci_1497TIGRFAM: MJ0042 family finger-like protein; KEGG: aav:Aave_0860 MJ0042 family finger-like protein. (475 aa)    
Predicted Functional Partners:
Daci_1498
PFAM: PfkB domain protein; KEGG: ajs:Ajs_3635 PfkB domain protein.
 
     0.806
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
  
    0.730
Daci_1484
PFAM: ribonuclease II; KEGG: aav:Aave_0843 ribonuclease II.
 
     0.677
Daci_2230
PFAM: protein of unknown function DUF513 hemX; KEGG: vei:Veis_1038 protein of unknown function DUF513, HemX.
  
     0.658
Daci_1454
PFAM: protein of unknown function DUF484; KEGG: ajs:Ajs_3687 protein of unknown function DUF484.
  
    0.609
Daci_1483
TIGRFAM: TonB family protein; KEGG: ajs:Ajs_3655 TonB family protein.
 
    0.604
Daci_2229
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain protein.
  
     0.602
Daci_3007
KEGG: ajs:Ajs_2549 hypothetical protein.
  
    0.574
Daci_1495
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.569
Daci_5001
KEGG: ajs:Ajs_1190 conserved hypothetical signal peptide protein.
  
    0.542
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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