Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Daci_1536Transcriptional regulator, XRE family; KEGG: plu:plu2131 putative transcriptional regulator. (105 aa)    
Predicted Functional Partners:
Daci_1535
PFAM: protein of unknown function DUF1044; KEGG: plu:plu2130 hypothetical protein.
 
  
 0.962
Daci_1537
KEGG: bpu:BPUM_2653 hypothetical protein.
       0.661
Daci_1538
Hypothetical protein.
       0.661
Daci_4802
KEGG: pol:Bpro_1534 hypothetical protein.
 
   
 0.583
Daci_4803
KEGG: bbr:BB3159 hypothetical protein.
 
   
 0.572
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.469
Daci_1211
Putative plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; KEGG: dno:DNO_0272 virulence-associated protein VapI.
 
   
 0.436
Daci_1686
Putative transcriptional regulator; TIGRFAM: addiction module antidote protein; KEGG: noc:Noc_0569 transcriptional regulator, Cro/CI family.
 
     0.425
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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