Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1555PFAM: DoxX family protein; KEGG: cko:CKO_00429 hypothetical protein. (151 aa)    
Predicted Functional Partners:
Daci_1556
PFAM: Amidohydrolase 3; KEGG: cko:CKO_00430 hypothetical protein.
 
     0.939
Daci_1557
PFAM: protein of unknown function DUF1427; KEGG: pau:PA14_29250 hypothetical protein.
 
     0.900
Daci_1554
PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: aav:Aave_0762 protein of unknown function DUF894, DitE.
 
     0.881
Daci_1558
PFAM: isochorismatase hydrolase; KEGG: smd:Smed_4075 isochorismatase hydrolase.
 
    0.740
Daci_3069
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; cytochrome c biogenesis protein transmembrane region; Redoxin domain protein; KEGG: bch:Bcen2424_6244 cytochrome c biogenesis protein, transmembrane region.
 
 
 0.550
Daci_1229
KEGG: bbr:BB1100 Mg(2+) transport ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein.
   
  0.479
Daci_2944
KEGG: psp:PSPPH_1082 hypothetical protein.
  
     0.457
Daci_2941
KEGG: xau:Xaut_1749 hypothetical protein.
  
     0.441
Daci_1559
PFAM: Pirin domain protein; KEGG: cvi:CV_1283 hypothetical protein; Belongs to the pirin family.
  
  
 0.425
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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