STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1556PFAM: Amidohydrolase 3; KEGG: cko:CKO_00430 hypothetical protein. (632 aa)    
Predicted Functional Partners:
Daci_1555
PFAM: DoxX family protein; KEGG: cko:CKO_00429 hypothetical protein.
 
     0.940
Daci_1554
PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: aav:Aave_0762 protein of unknown function DUF894, DitE.
 
     0.914
Daci_1557
PFAM: protein of unknown function DUF1427; KEGG: pau:PA14_29250 hypothetical protein.
 
     0.885
Daci_1558
PFAM: isochorismatase hydrolase; KEGG: smd:Smed_4075 isochorismatase hydrolase.
 
   
 0.871
Daci_2887
PFAM: isochorismatase hydrolase; KEGG: pae:PA2419 probable hydrolase.
 
   
 0.685
Daci_2888
PFAM: isochorismatase hydrolase; KEGG: cko:CKO_02173 hypothetical protein.
 
   
 0.677
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.