STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1559PFAM: Pirin domain protein; KEGG: cvi:CV_1283 hypothetical protein; Belongs to the pirin family. (234 aa)    
Predicted Functional Partners:
Daci_2494
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B.
 
  
 0.662
Daci_1560
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cvi:CV_1282 probable transcriptional regulator.
 
 
   0.649
Daci_1558
PFAM: isochorismatase hydrolase; KEGG: smd:Smed_4075 isochorismatase hydrolase.
  
    0.598
Daci_1557
PFAM: protein of unknown function DUF1427; KEGG: pau:PA14_29250 hypothetical protein.
       0.491
Daci_1555
PFAM: DoxX family protein; KEGG: cko:CKO_00429 hypothetical protein.
  
  
 0.424
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.