Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1571PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: ajs:Ajs_3579 rubredoxin-type Fe(Cys)4 protein. (48 aa)    
Predicted Functional Partners:
Daci_2004
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: azo:azo1175 nitrite reductase (NAD(P)H) large subunit,probable.
  
 
 0.822
Daci_2371
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_2839 nitrite reductase (NAD(P)H), large subunit.
  
 
 0.822
Daci_1574
PFAM: CheW domain protein; KEGG: ajs:Ajs_3576 putative CheW protein.
     
 0.716
Daci_1573
PFAM: response regulator receiver; KEGG: ajs:Ajs_3577 response regulator receiver protein.
     
 0.703
Daci_1570
PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: aav:Aave_0899 phosphomethylpyrimidine kinase type-1.
  
    0.635
Daci_1572
PFAM: response regulator receiver; KEGG: aav:Aave_0901 response regulator receiver protein.
       0.620
Daci_5072
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.618
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: ajs:Ajs_3581 glutamate-1-semialdehyde-2,1-aminomutase.
     
 0.598
Daci_1576
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: vei:Veis_3017 CheA signal transduction histidine kinases.
     
 0.592
Daci_1575
PFAM: chemotaxis sensory transducer; KEGG: aav:Aave_0904 methyl-accepting chemotaxis sensory transducer.
       0.586
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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