Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1575PFAM: chemotaxis sensory transducer; KEGG: aav:Aave_0904 methyl-accepting chemotaxis sensory transducer. (749 aa)    
Predicted Functional Partners:
Daci_1574
PFAM: CheW domain protein; KEGG: ajs:Ajs_3576 putative CheW protein.
 
 0.992
Daci_1576
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: vei:Veis_3017 CheA signal transduction histidine kinases.
 
 0.992
Daci_1572
PFAM: response regulator receiver; KEGG: aav:Aave_0901 response regulator receiver protein.
 
  
 0.991
Daci_1573
PFAM: response regulator receiver; KEGG: ajs:Ajs_3577 response regulator receiver protein.
 
 0.988
Daci_0655
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: aav:Aave_4378 CheA signal transduction histidine kinase.
 
 
 0.849
Daci_3759
PFAM: response regulator receiver; CheW domain protein; KEGG: vei:Veis_1763 putative CheW protein.
 
 
 0.711
Daci_5021
KEGG: aav:Aave_1422 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
   
 0.664
Daci_1458
KEGG: vei:Veis_4558 hypothetical protein.
 
     0.659
Daci_5578
PFAM: Pilus assembly protein PilP; KEGG: aav:Aave_0999 pilus assembly protein, PilQ.
  
   
 0.650
Daci_5580
PFAM: Fimbrial assembly family protein; KEGG: ajs:Ajs_0731 fimbrial assembly family protein.
  
   
 0.645
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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