STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1601KEGG: bch:Bcen2424_2187 hypothetical protein. (196 aa)    
Predicted Functional Partners:
Daci_6032
KEGG: ajs:Ajs_4108 hypothetical protein.
  
     0.589
Daci_4745
KEGG: bmn:BMA10247_0877 hypothetical protein.
  
     0.505
Daci_4894
PFAM: porin Gram-negative type; KEGG: bur:Bcep18194_B0482 outer membrane protein (porin).
  
     0.493
Daci_1253
KEGG: ajs:Ajs_0499 hypothetical protein.
  
     0.476
Daci_1710
PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_1150 histone family protein nucleoid-structuring protein H-NS.
  
     0.462
Daci_3292
TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: aav:Aave_3069 thiamine biosynthesis protein ThiS.
  
     0.454
Daci_4009
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_B1220 transcriptional regulator, LuxR family.
  
     0.420
Daci_2065
PFAM: TadE family protein; KEGG: bmn:BMA10247_1050 TadE family protein.
  
     0.404
Daci_1968
PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_1150 histone family protein nucleoid-structuring protein H-NS.
  
     0.403
Daci_4465
PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_2580 histone family protein nucleoid-structuring protein H-NS.
  
     0.400
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.