Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1634KEGG: bbr:BB1695 major head protein. (405 aa)    
Predicted Functional Partners:
Daci_1632
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bbr:BB1693 portal protein.
 
 
 
 0.971
Daci_1631
PFAM: Terminase; KEGG: bbr:BB1692 terminase.
 
   
 0.947
Daci_1633
PFAM: peptidase S14 ClpP; KEGG: bbr:BB1694 phage-related Clp protease; Belongs to the peptidase S14 family.
 
    0.930
Daci_1630
KEGG: bbr:BB1691 phage-related hypothetical protein.
     
 0.806
Daci_3465
Hypothetical protein; KEGG: bte:BTH_II1046 ClpP protease.
 
    0.764
Daci_1637
TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: sit:TM1040_1063 hypothetical protein.
  
 
 0.587
Daci_3256
KEGG: aav:Aave_1783 carbohydrate-binding family V/XII.
 
 
 0.519
Daci_1332
Hypothetical protein; KEGG: aav:Aave_1629 carbohydrate-binding family V/XII.
 
 
 0.517
Daci_1107
PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_0659 major facilitator superfamily MFS_1.
   
    0.500
Daci_1108
TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_0660 nitrite transporter.
   
    0.500
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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