STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1643Hypothetical protein; KEGG: mms:mma_2779 uncharacterized conserved protein (possible phage related tail length tape measure protein). (824 aa)    
Predicted Functional Partners:
Daci_1646
PFAM: NLP/P60 protein; KEGG: sit:TM1040_1071 putative phage cell wall peptidase, NlpC/P60.
  
  
 0.819
Daci_1644
Conserved hypothetical protein-like protein; KEGG: rsq:Rsph17025_3709 glycoside hydrolase, family 24.
       0.779
Daci_1645
PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1179 hypothetical protein.
       0.779
Daci_1642
Hypothetical protein.
       0.773
Daci_1640
KEGG: asu:Asuc_1245 hypothetical protein.
       0.598
Daci_1641
Hypothetical protein.
       0.598
Daci_1631
PFAM: Terminase; KEGG: bbr:BB1692 terminase.
 
     0.553
Daci_1638
TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: asu:Asuc_1243 phage protein, HK97 GP10 family.
  
    0.534
Daci_1632
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bbr:BB1693 portal protein.
 
     0.517
Daci_4084
TIGRFAM: phage tail tape measure protein, lambda family; phage tape measure protein; PFAM: Tape measure domain; KEGG: esa:ESA_01039 hypothetical protein.
 
   
 0.514
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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