STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1648KEGG: pmy:Pmen_3953 hypothetical protein. (223 aa)    
Predicted Functional Partners:
Daci_1647
Hypothetical protein; KEGG: nwi:Nwi_0792 gene transfer agent (GTA) like protein.
  
 
 0.818
Daci_1649
Hypothetical protein.
       0.773
Daci_1650
Hypothetical protein.
       0.572
Daci_1652
PFAM: protein of unknown function DUF847; KEGG: nmc:NMC1002 hypothetical protein.
       0.524
Daci_1651
Hypothetical protein.
       0.512
Daci_1653
KEGG: aav:Aave_1790 hypothetical protein.
       0.512
Daci_1654
KEGG: aav:Aave_1637 hypothetical protein.
       0.512
Daci_1655
KEGG: ajs:Ajs_2504 hypothetical protein.
       0.512
Daci_1656
KEGG: aav:Aave_2385 hypothetical protein.
       0.512
Daci_1646
PFAM: NLP/P60 protein; KEGG: sit:TM1040_1071 putative phage cell wall peptidase, NlpC/P60.
     
 0.416
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.