Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1667PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3544 lysine exporter protein (LysE/YggA). (209 aa)    
Predicted Functional Partners:
Daci_0048
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_0028 lysine exporter protein (LysE/YggA).
  
    0.786
Daci_1668
PFAM: MaoC domain protein dehydratase; KEGG: aav:Aave_3913 MaoC domain protein dehydratase.
       0.433
Daci_1666
TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: aav:Aave_3916 potassium efflux system protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
       0.421
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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