STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1682KEGG: ajs:Ajs_3529 hypothetical protein. (220 aa)    
Predicted Functional Partners:
Daci_1681
KEGG: ajs:Ajs_3530 putative transmembrane cytochrome oxidase.
 
  
 0.952
Daci_1680
KEGG: ajs:Ajs_3531 putative transmembrane protein.
 
     0.894
Daci_4065
PFAM: cytochrome oxidase assembly; KEGG: aav:Aave_3900 cytochrome oxidase assembly.
 
 
 0.892
Daci_1674
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.884
Daci_1677
PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: ajs:Ajs_3534 cytochrome c oxidase assembly protein CtaG/Cox11.
 
 
 0.825
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.775
Daci_1678
KEGG: aav:Aave_3904 putative transmembrane protein.
 
    0.768
Daci_1679
PFAM: cytochrome c oxidase subunit III; KEGG: ajs:Ajs_3532 cytochrome c oxidase, subunit III.
 
  
 0.740
Daci_0498
PFAM: cytochrome c class I; KEGG: aav:Aave_0385 cytochrome c, class I.
 
   
 0.713
Daci_5347
KEGG: aav:Aave_1882 hypothetical protein.
  
     0.676
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.