Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1687TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: neu:NE1356 hypothetical protein. (98 aa)    
Predicted Functional Partners:
Daci_1686
Putative transcriptional regulator; TIGRFAM: addiction module antidote protein; KEGG: noc:Noc_0569 transcriptional regulator, Cro/CI family.
 
  
 0.957
Daci_1245
TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: pna:Pnap_0084 protein of unknown function DUF891.
  
     0.773
Daci_1688
KEGG: ajs:Ajs_3524 cyclic nucleotide-binding protein.
       0.625
Daci_4802
KEGG: pol:Bpro_1534 hypothetical protein.
  
     0.572
Daci_4803
KEGG: bbr:BB3159 hypothetical protein.
 
     0.560
Daci_1244
KEGG: pna:Pnap_0085 putative transcriptional regulator.
 
  
 0.455
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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