STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1688KEGG: ajs:Ajs_3524 cyclic nucleotide-binding protein. (243 aa)    
Predicted Functional Partners:
Daci_1686
Putative transcriptional regulator; TIGRFAM: addiction module antidote protein; KEGG: noc:Noc_0569 transcriptional regulator, Cro/CI family.
       0.625
Daci_1687
TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: neu:NE1356 hypothetical protein.
       0.625
Daci_4365
PFAM: protein kinase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; tyrosine protein kinase; serine/threonine protein kinase; KEGG: aav:Aave_3066 serine/threonine protein kinase.
  
 0.501
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
   
 
 0.498
Daci_1692
PFAM: fatty acid hydroxylase; KEGG: bbr:BB0103 putative desaturase.
   
   0.473
Daci_1691
PFAM: fatty acid desaturase; KEGG: bpe:BP3207 putative fatty acid desaturase.
  
  
 0.470
Daci_1690
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: bbr:BB0106 3-oxoacyl-(acyl carrier protein) synthase.
       0.453
Daci_1689
KEGG: bbr:BB0107 hypothetical protein.
       0.452
Daci_5558
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ajs:Ajs_0741 glutamate synthase (ferredoxin).
     
 0.429
Daci_1693
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3523 uncharacterized protein UPF0065.
       0.412
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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