STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1689KEGG: bbr:BB0107 hypothetical protein. (325 aa)    
Predicted Functional Partners:
Daci_1690
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: bbr:BB0106 3-oxoacyl-(acyl carrier protein) synthase.
 
     0.949
Daci_1691
PFAM: fatty acid desaturase; KEGG: bpe:BP3207 putative fatty acid desaturase.
 
     0.948
Daci_1692
PFAM: fatty acid hydroxylase; KEGG: bbr:BB0103 putative desaturase.
 
     0.944
Daci_1693
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3523 uncharacterized protein UPF0065.
       0.693
Daci_1785
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bmn:BMA10247_A0721 hypothetical protein.
  
     0.584
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
       0.529
Daci_2221
KEGG: pap:PSPA7_1712 hypothetical protein.
  
     0.518
Daci_3733
PFAM: protein of unknown function DUF81; KEGG: pfl:PFL_4527 hypothetical protein.
  
     0.513
Daci_2077
PFAM: outer membrane efflux protein; KEGG: mag:amb3061 outer membrane protein.
  
     0.478
Daci_1688
KEGG: ajs:Ajs_3524 cyclic nucleotide-binding protein.
       0.452
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.