STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1691PFAM: fatty acid desaturase; KEGG: bpe:BP3207 putative fatty acid desaturase. (311 aa)    
Predicted Functional Partners:
Daci_1692
PFAM: fatty acid hydroxylase; KEGG: bbr:BB0103 putative desaturase.
 
  
 0.963
Daci_1689
KEGG: bbr:BB0107 hypothetical protein.
 
     0.948
Daci_1690
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: bbr:BB0106 3-oxoacyl-(acyl carrier protein) synthase.
 
  
 0.930
Daci_0687
PFAM: ferredoxin; cytochrome P450; Oxidoreductase FAD-binding domain protein; KEGG: reu:Reut_B5278 ferredoxin:cytochrome P450:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region.
 
  
 0.787
Daci_1693
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3523 uncharacterized protein UPF0065.
       0.723
Daci_4991
KEGG: reh:H16_B0479 hypothetical protein.
  
   
 0.560
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
     
 0.554
Daci_4755
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: aav:Aave_3732 beta-ketoacyl synthase.
 
  
 0.535
Daci_5047
PFAM: GCN5-related N-acetyltransferase; KEGG: ppf:Pput_3213 GCN5-related N-acetyltransferase.
  
   
 0.509
Daci_2447
KEGG: azo:azo0657 hypothetical protein.
  
     0.499
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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