Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1703Hypothetical protein; KEGG: ppf:Pput_0007 AAA ATPase. (322 aa)    
Predicted Functional Partners:
Daci_1702
Hypothetical protein; KEGG: bch:Bcen2424_5218 integrase, catalytic region.
 
     0.950
Daci_1933
KEGG: bbr:BB3510 phage-related hypothetical protein.
 
     0.661
Daci_3662
PFAM: Ig family protein; KEGG: rfr:Rfer_1577 protease-like.
  
     0.653
Daci_1331
Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.
  
    0.610
Daci_0899
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_2324 methyltransferase type 11.
  
     0.581
Daci_3255
PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1782 prophage tail length tape measure.
  
     0.578
Daci_5859
KEGG: pau:PA14_60860 transcriptional regulatory protein NfxB.
  
     0.578
Daci_1311
KEGG: aav:Aave_4148 hypothetical protein.
  
     0.550
Daci_5718
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: aav:Aave_4238 hypothetical protein.
  
    0.517
Daci_1304
KEGG: aav:Aave_4155 general secretion pathway protein J.
  
     0.513
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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