Daci_1707 protein (Delftia acidovorans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Daci_1707

KEGG: ajs:Ajs_1875 hypothetical protein. (161 aa)

Predicted Functional Partners:

Daci_1311

0.536

Daci_0375

0.517

Daci_5859

0.492

Daci_3255

0.483

Daci_4436

0.453

Daci_1331

0.445

Daci_3662

0.434

Daci_1888

0.424

Daci_1708

0.412

Daci_0966

0.409

Your Current Organism:

Delftia acidovorans

NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Daci_0375	Daci_1707	KEGG: pol:Bpro_1655 hypothetical protein.	KEGG: ajs:Ajs_1875 hypothetical protein.	0.517
Daci_0375	Daci_4436	KEGG: pol:Bpro_1655 hypothetical protein.	PFAM: porin Gram-negative type; KEGG: bxe:Bxe_C0935 outer membrane porin, OmpC family.	0.508
Daci_0966	Daci_1311	PFAM: porin Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type.	KEGG: aav:Aave_4148 hypothetical protein.	0.444
Daci_0966	Daci_1331	PFAM: porin Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type.	Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.	0.476
Daci_0966	Daci_1707	PFAM: porin Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type.	KEGG: ajs:Ajs_1875 hypothetical protein.	0.409
Daci_0966	Daci_3255	PFAM: porin Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type.	PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1782 prophage tail length tape measure.	0.550
Daci_0966	Daci_3662	PFAM: porin Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type.	PFAM: Ig family protein; KEGG: rfr:Rfer_1577 protease-like.	0.586
Daci_0966	Daci_4436	PFAM: porin Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type.	PFAM: porin Gram-negative type; KEGG: bxe:Bxe_C0935 outer membrane porin, OmpC family.	0.668
Daci_1311	Daci_0966	KEGG: aav:Aave_4148 hypothetical protein.	PFAM: porin Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type.	0.444
Daci_1311	Daci_1331	KEGG: aav:Aave_4148 hypothetical protein.	Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.	0.724
Daci_1311	Daci_1707	KEGG: aav:Aave_4148 hypothetical protein.	KEGG: ajs:Ajs_1875 hypothetical protein.	0.536
Daci_1311	Daci_3255	KEGG: aav:Aave_4148 hypothetical protein.	PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1782 prophage tail length tape measure.	0.717
Daci_1311	Daci_3662	KEGG: aav:Aave_4148 hypothetical protein.	PFAM: Ig family protein; KEGG: rfr:Rfer_1577 protease-like.	0.734
Daci_1311	Daci_4436	KEGG: aav:Aave_4148 hypothetical protein.	PFAM: porin Gram-negative type; KEGG: bxe:Bxe_C0935 outer membrane porin, OmpC family.	0.551
Daci_1311	Daci_5859	KEGG: aav:Aave_4148 hypothetical protein.	KEGG: pau:PA14_60860 transcriptional regulatory protein NfxB.	0.570
Daci_1331	Daci_0966	Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.	PFAM: porin Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type.	0.476
Daci_1331	Daci_1311	Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.	KEGG: aav:Aave_4148 hypothetical protein.	0.724
Daci_1331	Daci_1707	Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.	KEGG: ajs:Ajs_1875 hypothetical protein.	0.445
Daci_1331	Daci_3255	Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.	PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1782 prophage tail length tape measure.	0.407
Daci_1331	Daci_3662	Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.	PFAM: Ig family protein; KEGG: rfr:Rfer_1577 protease-like.	0.719