Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1707KEGG: ajs:Ajs_1875 hypothetical protein. (161 aa)    
Predicted Functional Partners:
Daci_1311
KEGG: aav:Aave_4148 hypothetical protein.
  
     0.536
Daci_0375
KEGG: pol:Bpro_1655 hypothetical protein.
  
     0.517
Daci_5859
KEGG: pau:PA14_60860 transcriptional regulatory protein NfxB.
  
    0.494
Daci_3255
PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1782 prophage tail length tape measure.
  
     0.483
Daci_4436
PFAM: porin Gram-negative type; KEGG: bxe:Bxe_C0935 outer membrane porin, OmpC family.
  
     0.453
Daci_1331
Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.
  
     0.445
Daci_3662
PFAM: Ig family protein; KEGG: rfr:Rfer_1577 protease-like.
  
     0.434
Daci_1888
PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_4411 mutlidrug resistance protein, putative.
  
     0.424
Daci_1708
KEGG: sty:HCM2.0093c hypothetical protein.
       0.412
Daci_0966
PFAM: porin Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type.
  
     0.409
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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