STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1735SMART: AAA ATPase; KEGG: xac:XAC2215 hypothetical protein. (484 aa)    
Predicted Functional Partners:
Daci_1736
KEGG: xac:XAC2214 hypothetical protein.
 
   
 0.903
Daci_1734
KEGG: aav:Aave_3790 transposase, IS4 family protein.
       0.773
Daci_2199
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: pol:Bpro_4581 NAD-dependent epimerase/dehydratase.
   
    0.591
Daci_1733
KEGG: aav:Aave_3789 putative TIS1421-transposase orfA protein.
       0.461
Daci_2885
KEGG: xft:PD1611 fimbrial assembly protein.
  
     0.450
Daci_2448
KEGG: aba:Acid345_0330 hypothetical protein.
  
     0.447
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.