Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1738KEGG: pol:Bpro_2505 hypothetical protein. (114 aa)    
Predicted Functional Partners:
Daci_1739
PFAM: outer membrane efflux protein; KEGG: azo:azo0224 hypothetical outer membrane efflux protein.
       0.540
Daci_1740
KEGG: mms:mma_3051 hypothetical protein.
       0.540
Daci_1741
KEGG: azo:azo0226 conserved hypothetical secreted protein.
       0.538
Daci_1737
PFAM: protein of unknown function DUF6 transmembrane; KEGG: reu:Reut_A1523 protein of unknown function DUF6, transmembrane.
       0.524
Daci_1742
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: azo:azo0227 putative cation efflux system protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.503
Daci_1743
KEGG: azo:azo0228 hypothetical protein.
       0.404
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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