STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1740KEGG: mms:mma_3051 hypothetical protein. (194 aa)    
Predicted Functional Partners:
Daci_1739
PFAM: outer membrane efflux protein; KEGG: azo:azo0224 hypothetical outer membrane efflux protein.
 
   0.969
Daci_1741
KEGG: azo:azo0226 conserved hypothetical secreted protein.
 
     0.965
Daci_1742
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: azo:azo0227 putative cation efflux system protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.931
Daci_1743
KEGG: azo:azo0228 hypothetical protein.
 
     0.896
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.799
macB-2
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.799
Daci_3881
KEGG: mms:mma_1666 hypothetical protein.
  
     0.669
Daci_1738
KEGG: pol:Bpro_2505 hypothetical protein.
       0.541
Daci_5155
PFAM: protein of unknown function DUF214; KEGG: ajs:Ajs_3114 protein of unknown function DUF214.
  
 
 0.519
Daci_2740
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rme:Rmet_3040 UBA/ThiF-type NAD/FAD binding fold.
 
     0.509
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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