Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1764TIGRFAM: holo-ACP synthase, malonate decarboxylase-specific; KEGG: rfr:Rfer_1847 malonate decarboxylase. (237 aa)    
Predicted Functional Partners:
mdcB
Triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
  
  0.976
Daci_1765
TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: mpt:Mpe_A2892 malonate decarboxylase gamma subunit.
 
     0.959
Daci_1767
TIGRFAM: malonate decarboxylase acyl carrier protein; PFAM: malonate decarboxylase delta subunit; KEGG: mpt:Mpe_A2894 delta subunit of malonate decarboxylase.
 
     0.959
Daci_1766
TIGRFAM: malonate decarboxylase, beta subunit; KEGG: mpt:Mpe_A2893 beta subunit of malonate decarboxylase.
 
     0.957
Daci_1768
TIGRFAM: malonate decarboxylase, alpha subunit; KEGG: mpt:Mpe_A2895 alpha subunit of malonate decarboxylase.
 
     0.956
Daci_1762
KEGG: rfr:Rfer_1849 (acyl-carrier protein) S-malonyltransferase.
 
   
 0.904
Daci_1769
PFAM: Citrate transporter; Dicarboxylate carrier MatC domain protein; KEGG: mpt:Mpe_A2896 dicarboxylate carrier protein.
 
     0.683
Daci_2896
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_4448 TonB-dependent receptor.
  
     0.623
Daci_1761
TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: mpt:Mpe_A1385 acetyl-coenzyme A synthetase.
       0.519
Daci_0978
PFAM: lipolytic protein G-D-S-L family; KEGG: aav:Aave_4567 phospholipase/lecithinase/hemolysin-like protein.
  
     0.479
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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