STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1794PFAM: regulatory protein MarR; KEGG: bra:BRADO6297 putative transcriptional regulatory protein, MarR family. (209 aa)    
Predicted Functional Partners:
Daci_1795
PFAM: class II aldolase/adducin family protein; KEGG: bxe:Bxe_B1223 putative aldolase.
       0.773
Daci_1796
KEGG: pol:Bpro_0197 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein.
 
     0.754
Daci_1797
PFAM: CutA1 divalent ion tolerance protein; KEGG: ajs:Ajs_3521 CutA1 divalent ion tolerance protein.
       0.567
Daci_1793
Carboxymethylenebutenolidase; PFAM: dienelactone hydrolase; KEGG: rme:Rmet_3321 dienelactone hydrolase.
       0.558
Daci_0579
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: pol:Bpro_4535 monooxygenase, FAD-binding.
 
  
 0.500
Daci_4443
KEGG: pol:Bpro_1853 4-hydroxyphenylpyruvate dioxygenase.
 
    0.493
Daci_3597
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: ajs:Ajs_2077 maleylacetoacetate isomerase.
 
     0.486
Daci_4795
KEGG: reu:Reut_B4501 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.453
Daci_1792
PFAM: flavin reductase domain protein FMN-binding; KEGG: aau:AAur_0247 putative monooxygenase component B.
       0.447
Daci_4008
PFAM: monooxygenase FAD-binding; KEGG: bxe:Bxe_A2727 putative 3-(3-hydroxy-phenyl)propionate hydroxylase (MhpA).
 
  
 0.437
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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